STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3310KEGG: cce:Ccel_1238 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Glycoside hydrolase family 59; Dockerin type 1; SMART: cellulose binding type IV. (1121 aa)    
Predicted Functional Partners:
Cpap_3309
Alpha-galactosidase; PFAM: Carbohydrate binding family 6; glycoside hydrolase clan GH-D; Dockerin type 1; KEGG: cce:Ccel_1237 carbohydrate binding family 6; SMART: cellulose binding type IV.
 
  
 
0.903
Cpap_3556
Alpha-galactosidase; Manually curated; KEGG: lrl:LC705_02697 family 36 glycoside hydrolase; PFAM: glycoside hydrolase clan GH-D.
 
  
  0.796
Cpap_2266
PFAM: glycoside hydrolase clan GH-D; KEGG: pjd:Pjdr2_3562 hypothetical protein.
  
  
  0.745
Cpap_3311
KEGG: cce:Ccel_1240 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; protein of unknown function DUF303 acetylesterase; SMART: cellulose binding type IV.
 
    
0.628
Cpap_3307
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_1235 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
 
 
0.526
Cpap_3314
KEGG: cce:Ccel_1242 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; SMART: cellulose binding type IV.
 
  
 
0.486
uxaC
KEGG: cce:Ccel_0214 glucuronate isomerase; PFAM: Glucuronate isomerase.
  
  
  0.470
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
 
  
  0.464
Cpap_3305
Glycoside hydrolase family 43; KEGG: cce:Ccel_1233 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
 
0.436
Cpap_3312
PFAM: coagulation factor 5/8 type domain protein; Dockerin type 1; KEGG: cce:Ccel_1241 carbohydrate binding family 6.
 
  
 
0.430
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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