STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3313KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; esterase; Dockerin type 1; SMART: cellulose binding type IV. (483 aa)    
Predicted Functional Partners:
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.816
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.771
Cpap_3312
PFAM: coagulation factor 5/8 type domain protein; Dockerin type 1; KEGG: cce:Ccel_1241 carbohydrate binding family 6.
 
  
 
0.746
Cpap_3314
KEGG: cce:Ccel_1242 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; SMART: cellulose binding type IV.
 
    
0.732
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
 
     0.726
Cpap_3332
PFAM: glycoside hydrolase family 43; KEGG: cce:Ccel_1257 glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.682
Cpap_0589
Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_2614 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.667
Cpap_0764
Alpha-L-fucosidase; KEGG: gym:GYMC10_5610 alpha-L-fucosidase.
 
  
  0.646
Cpap_2860
Xylan 1,4-beta-xylosidase; KEGG: pru:PRU_2063 family 43 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.635
Cpap_0962
PFAM: Dockerin type 1; KEGG: cce:Ccel_0417 cellulosome protein dockerin type I.
  
     0.633
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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