STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3315KEGG: cce:Ccel_1243 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Cpap_3316
KEGG: cce:Ccel_1244 hypothetical protein; manually curated; PFAM: glutaredoxin 2.
       0.701
Cpap_3317
KEGG: cce:Ccel_1018 hypothetical protein.
       0.634
Cpap_3318
Pectate lyase; KEGG: cce:Ccel_1245 pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase; Dockerin type 1.
       0.605
Cpap_3319
PFAM: Pectinesterase; Dockerin type 1; KEGG: cce:Ccel_1246 pectinesterase.
       0.561
Cpap_3314
KEGG: cce:Ccel_1242 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; SMART: cellulose binding type IV.
       0.497
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
       0.491
Cpap_3313
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; esterase; Dockerin type 1; SMART: cellulose binding type IV.
       0.451
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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