STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3346FkbH like protein; KEGG: amr:AM1_3617 FkbH domain-containing protein; TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: NLI interacting domain protein. (596 aa)    
Predicted Functional Partners:
Cpap_3345
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2509 phosphopantetheine-binding.
       0.773
Cpap_3347
KEGG: cth:Cthe_0655 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
       0.628
Cpap_3344
PFAM: Protein of unknown function DUF3343; KEGG: amt:Amet_4104 radical SAM domain-containing protein.
     
 0.604
Cpap_3342
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2518 phosphopantetheine-binding.
       0.577
Cpap_3343
PFAM: AMP-dependent synthetase and ligase; KEGG: cce:Ccel_2516 AMP-dependent synthetase and ligase.
       0.577
Cpap_3341
PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; KEGG: cce:Ccel_2519 5'-nucleotidase domain protein; Belongs to the 5'-nucleotidase family.
       0.466
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
     0.457
Cpap_3348
KEGG: cce:Ccel_2515 hypothetical protein.
       0.426
Cpap_3338
KEGG: cce:Ccel_2522 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.408
Cpap_3339
PFAM: protein of unknown function DUF990; KEGG: cce:Ccel_2521 protein of unknown function DUF990.
       0.408
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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