STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3354KEGG: cai:Caci_6292 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Cpap_3352
PFAM: SUA5/yciO/yrdC domain; KEGG: tle:Tlet_1383 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.773
Cpap_3353
PFAM: alpha/beta hydrolase fold; KEGG: sth:STH2368 hypothetical protein.
       0.773
Cpap_3351
PFAM: thymidylate kinase; KEGG: cce:Ccel_2513 thymidylate kinase-like protein.
     
 0.677
Cpap_3350
TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; KEGG: aco:Amico_0135 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region.
       0.671
Cpap_3349
KEGG: aco:Amico_0134 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region.
       0.628
Cpap_1730
PFAM: glycoside hydrolase clan GH-D; Dockerin type 1; KEGG: cce:Ccel_1597 glycoside hydrolase clan GH-D.
   
   0.573
Cpap_2580
KEGG: cce:Ccel_2508 hypothetical protein.
   
   0.573
Cpap_2613
KEGG: cce:Ccel_2508 hypothetical protein.
   
   0.573
Cpap_2614
KEGG: cce:Ccel_2508 hypothetical protein.
   
   0.573
Cpap_2687
KEGG: ngr:NAEGRDRAFT_75991 hypothetical protein.
   
   0.573
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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