STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3390KEGG: cbl:CLK_0742 hypothetical protein. (367 aa)    
Predicted Functional Partners:
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
   
 
 0.852
Cpap_3394
PFAM: Cellulose synthase BcsB; KEGG: cdl:CDR20291_0887 putative cell wall anchored protein.
 
   
 0.747
cinA
TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; SMART: molybdopterin binding domain.
     
 0.721
Cpap_0544
TIGRFAM: YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; YD repeat-containing protein; Kelch repeat type 1-containing protein; KEGG: cth:Cthe_1373 YD repeat-containing protein; SMART: Kelch repeat type 1-containing protein.
  
 
 0.713
Cpap_0953
KEGG: cce:Ccel_2153 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; YD repeat-containing protein; Belongs to the peptidase S8 family.
  
 
 0.713
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
  
 
 0.713
Cpap_2063
PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; KEGG: cce:Ccel_0394 inosine 5-monophosphate dehydrogenase; SMART: CBS domain containing protein.
    
  0.688
Cpap_3391
Diguanylate cyclase; KEGG: gym:GYMC10_0385 putative diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
 
  
 0.658
Cpap_1531
KEGG: gka:GK0542 hypothetical protein.
   
 
 0.576
Cpap_1272
TIGRFAM: phage major capsid protein, HK97 family; KEGG: afl:Aflv_0664 phage major capsid protein.
   
   0.570
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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