STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3400KEGG: cce:Ccel_1297 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Cpap_3399
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cce:Ccel_1296 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin.
       0.768
Cpap_3398
Hypothetical protein; KEGG: tau:Tola_2091 PTS system, fructose subfamily, IIC subunit.
       0.601
Cpap_3397
KEGG: cce:Ccel_1295 hypothetical protein.
       0.495
Cpap_3396
KEGG: cce:Ccel_1294 hypothetical protein.
       0.480
Cpap_3401
PFAM: glycoside hydrolase family 8; Dockerin type 1; KEGG: cce:Ccel_1298 glycoside hydrolase family 8.
       0.410
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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