STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3447PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. (372 aa)    
Predicted Functional Partners:
Cpap_2410
KEGG: cce:Ccel_3346 regulatory protein, MerR.
  
     0.725
Cpap_2176
PFAM: FlgN family protein; KEGG: cce:Ccel_0107 FlgN family protein.
  
     0.689
Cpap_0336
KEGG: cce:Ccel_2928 hypothetical protein.
  
     0.668
Cpap_0239
KEGG: cce:Ccel_0718 hypothetical protein.
  
     0.652
Cpap_3446
KEGG: cce:Ccel_1340 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel domain-containing protein; SMART: Stress responsive alpha-beta barrel domain-containing protein.
  
    0.639
Cpap_1960
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.638
Cpap_0057
KEGG: cce:Ccel_2402 hypothetical protein.
 
     0.636
Cpap_0813
PFAM: UspA domain-containing protein; KEGG: cce:Ccel_2423 UspA domain protein.
  
     0.633
Cpap_2343
Ig-like, group 2; KEGG: cce:Ccel_3406 Ig-like, group 2.
  
     0.623
Cpap_1961
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0289 S-layer domain protein.
  
     0.614
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.