STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3454PFAM: protein of unknown function DUF1980; KEGG: cbe:Cbei_4663 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Cpap_3455
PFAM: permease; cobalamin synthesis protein P47K; KEGG: cbe:Cbei_4662 permease.
 
  
 0.977
Cpap_3456
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K.
 
     0.927
Cpap_3457
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: lpc:LPC_2231 putative S-isoprenylcysteine methyltransferase.
 
     0.516
Cpap_1147
PFAM: S-layer domain-containing protein; KEGG: pjd:Pjdr2_0886 cell wall/surface repeat protein.
  
     0.454
Cpap_0275
KEGG: amt:Amet_4595 membrane protein.
  
     0.404
Cpap_1734
PFAM: permease; KEGG: cce:Ccel_0907 permease.
  
  
 0.404
Cpap_3757
PFAM: permease; KEGG: cce:Ccel_1066 permease.
  
  
 0.404
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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