STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3472KEGG: amt:Amet_2039 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (200 aa)    
Predicted Functional Partners:
Cpap_3471
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.995
Cpap_3470
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_2037 binding-protein-dependent transport systems inner membrane component.
 
 
 0.977
Cpap_3469
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mac:MA1913 dipeptide ABC transporter, permease protein.
 
 
 0.969
Cpap_3468
PFAM: extracellular solute-binding protein family 5; KEGG: amt:Amet_2035 extracellular solute-binding protein.
 
 
 0.951
Cpap_3473
Hypothetical protein.
       0.773
Cpap_3134
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_1766 binding-protein-dependent transport systems inner membrane component.
 
 0.708
Cpap_2130
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0047 binding-protein-dependent transport systems inner membrane component.
 
 0.692
Cpap_3133
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_1767 binding-protein-dependent transport systems inner membrane component.
 
 
 0.626
Cpap_1587
PFAM: extracellular solute-binding protein family 5; KEGG: cce:Ccel_0608 extracellular solute-binding protein family 5.
 
 
 0.599
Cpap_3135
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: cce:Ccel_1765 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
0.579
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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