STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3485KEGG: pjd:Pjdr2_2687 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (553 aa)    
Predicted Functional Partners:
Cpap_3484
PFAM: cobalt transport protein; KEGG: pjd:Pjdr2_2686 cobalt transport protein.
 
 0.982
Cpap_3486
KEGG: pjd:Pjdr2_2688 hypothetical protein.
     0.965
Cpap_3483
KEGG: pjd:Pjdr2_2685 hypothetical protein.
 
     0.949
Cpap_3482
PFAM: S-layer domain-containing protein; cytochrome P450; KEGG: pjd:Pjdr2_2684 S-layer domain protein.
 
     0.926
Cpap_1759
PFAM: cobalt transport protein; KEGG: dhd:Dhaf_4773 cobalt transport protein.
 
 0.764
ecfT
Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.703
Cpap_2426
PFAM: cobalt transport protein; KEGG: eel:EUBELI_00330 cobalt/nickel transport system permease protein.
 
 0.703
Cpap_3471
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
0.699
Cpap_3089
PFAM: cobalt transport protein; KEGG: ele:Elen_2485 cobalt transport protein.
  
 0.692
Cpap_3364
KEGG: cce:Ccel_1268 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein.
 
 0.691
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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