STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3487PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: cdl:CDR20291_0172 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Cpap_3488
PFAM: periplasmic binding protein; KEGG: dhd:Dhaf_0343 periplasmic binding protein.
 
    0.885
Cpap_3489
PFAM: transport system permease protein; KEGG: det:DET1175 iron ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.827
Cpap_3490
KEGG: det:DET1176 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.825
Cpap_3491
PFAM: Methyltransferase type 11; KEGG: mla:Mlab_1008 hypothetical protein.
 
     0.793
Cpap_1029
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: cce:Ccel_0438 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
  
  
  0.757
Cpap_0345
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: cce:Ccel_2918 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
  
  
  0.725
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
     
 0.661
Cpap_0797
PFAM: glutamate synthase alpha subunit domain protein; KEGG: cth:Cthe_0201 glutamate synthase (NADPH) GltB3 subunit.
  
 
 0.625
Cpap_4136
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; KEGG: cce:Ccel_2304 respiratory-chain NADH dehydrogenase domain 51 kDa subunit.
    
  0.617
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
 0.522
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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