STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3488PFAM: periplasmic binding protein; KEGG: dhd:Dhaf_0343 periplasmic binding protein. (372 aa)    
Predicted Functional Partners:
Cpap_3489
PFAM: transport system permease protein; KEGG: det:DET1175 iron ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.989
Cpap_3490
KEGG: det:DET1176 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.986
Cpap_2738
PFAM: transport system permease protein; KEGG: ckr:CKR_1584 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.949
Cpap_2737
KEGG: ckr:CKR_1585 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.931
Cpap_3823
PFAM: transport system permease protein; KEGG: lsp:Bsph_0134 iron(III) dicitrate transport system permease protein FecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.923
Cpap_2503
PFAM: transport system permease protein; KEGG: cce:Ccel_3203 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.917
Cpap_3487
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: cdl:CDR20291_0172 hypothetical protein.
 
    0.885
Cpap_3491
PFAM: Methyltransferase type 11; KEGG: mla:Mlab_1008 hypothetical protein.
 
     0.846
Cpap_2504
KEGG: cce:Ccel_3202 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.842
Cpap_2334
KEGG: cce:Ccel_3414 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.769
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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