STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3499PFAM: Lipoprotein LpqB, GerMN domain; KEGG: cce:Ccel_1351 hypothetical protein. (396 aa)    
Predicted Functional Partners:
Cpap_2990
PFAM: Sporulation stage III protein AF; KEGG: cce:Ccel_1911 hypothetical protein.
  
    0.742
Cpap_2986
KEGG: cce:Ccel_1915 stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
  
    0.734
Cpap_3148
TIGRFAM: stage II sporulation protein M; KEGG: cce:Ccel_1752 stage II sporulation protein M.
  
     0.707
Cpap_0664
KEGG: cce:Ccel_2076 putative transmembrane anti-sigma factor.
  
     0.671
Cpap_2164
PFAM: FlgN family protein; KEGG: cce:Ccel_0093 FlgN family protein.
  
     0.667
Cpap_2095
PFAM: sigmaK-factor processing regulatory BofA; KEGG: cce:Ccel_0015 sigmaK-factor processing regulatory BofA.
  
     0.656
Cpap_0239
KEGG: cce:Ccel_0718 hypothetical protein.
 
 
   0.612
Cpap_1951
PFAM: protein of unknown function DUF1779; KEGG: cce:Ccel_0279 protein of unknown function DUF1779.
  
     0.600
Cpap_3498
KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin.
    
  0.591
Cpap_2989
KEGG: cce:Ccel_1912 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
     0.590
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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