STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3512KEGG: cce:Ccel_1356 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Cpap_3513
PFAM: cell wall hydrolase SleB; KEGG: cce:Ccel_1357 cell wall hydrolase, SleB.
 
    0.948
Cpap_3072
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cwo:Cwoe_4565 transglycosylase domain protein.
  
     0.732
Cpap_2117
TIGRFAM: germination protein YpeB; KEGG: cce:Ccel_0036 germination protein YpeB.
  
     0.715
Cpap_2430
KEGG: cce:Ccel_3013 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.683
Cpap_0813
PFAM: UspA domain-containing protein; KEGG: cce:Ccel_2423 UspA domain protein.
  
     0.653
Cpap_3165
KEGG: cce:Ccel_1735 hypothetical protein.
  
     0.638
Cpap_2432
KEGG: aoe:Clos_2720 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.635
Cpap_0664
KEGG: cce:Ccel_2076 putative transmembrane anti-sigma factor.
  
     0.632
Cpap_0306
KEGG: cce:Ccel_2988 hypothetical protein.
  
     0.575
Cpap_2116
KEGG: cce:Ccel_0035 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.
 
    0.550
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.