STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3515KEGG: cce:Ccel_1359 4Fe-4S ferredoxin iron-sulfur binding domain protein. (243 aa)    
Predicted Functional Partners:
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
 0.913
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
    
 0.875
Cpap_2812
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; KEGG: clj:CLJU_c30260 putative oxidoreductase.
  
 0.872
Cpap_0755
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; iron hydrogenase small subunit; ferredoxin; KEGG: cce:Ccel_2467 hydrogenase, Fe-only; SMART: iron hydrogenase small subunit.
   
 0.853
Cpap_2521
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; KEGG: drm:Dred_3290 hydrogenases, Fe-only; SMART: iron hydrogenase small subunit.
   
 0.853
Cpap_4227
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; iron hydrogenase small subunit; ferredoxin; KEGG: cce:Ccel_2232 hydrogenase, Fe-only; SMART: iron hydrogenase small subunit.
   
 0.853
Cpap_4226
KEGG: cce:Ccel_2233 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain.
    
 0.787
Cpap_3516
KEGG: cce:Ccel_1360 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding.
 
     0.688
Cpap_1013
KEGG: geo:Geob_3258 formate C-acetyltransferase; PFAM: pyruvate formate-lyase PFL.
     
 0.678
Cpap_2348
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cpe:CPE2531 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.672
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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