STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3516KEGG: cce:Ccel_1360 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding. (237 aa)    
Predicted Functional Partners:
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
    
 0.872
Cpap_1445
KEGG: pmu:PM0185 hypothetical protein.
    
  0.850
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
    
 0.810
Cpap_0012
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; phosphopantetheine-binding; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cpi:Cpin_5296 beta-ketoacyl synthase.
  
 0.806
Cpap_0013
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; phosphopantetheine-binding; short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_4527 polyketide synthase.
  
 0.806
Cpap_0280
Beta-ketoacyl-acyl-carrier-protein synthase I., 6-deoxyerythronolide-B synthase; Manually curated; KEGG: mxa:MXAN_3935 non-ribosomal peptide synthase/polyketide synthase Ta1; PFAM: Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; KR domain protein.
  
 0.806
Cpap_2599
Acyl transferase; KEGG: ava:Ava_3986 short-chain dehydrogenase/reductase SDR; PFAM: Acyl transferase; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; Methyltransferase type 12; NADH:flavin oxidoreductase/NADH oxidase; SMART: Polyketide synthase, beta-ketoacyl synthase region; Polyketide synthase, acyl transferase domain; Polyketide synthase, phosphopantetheine-binding; Polyketide synthase/Fatty acid synthase, KR.
  
 0.806
Cpap_2600
6-deoxyerythronolide-B synthase; PFAM: Acyl transferase; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase; SMART: Polyketide synthase, beta-ketoacyl synthase region; Polyketide synthase, acyl transferase domain; Polyketide synthase/Fatty acid synthase, KR.
  
 0.806
Cpap_2601
KEGG: mxa:MXAN_4527 polyketide synthase; manually curated; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; phosphopantetheine-binding.
  
 0.806
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.806
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.