STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3527TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: cce:Ccel_1371 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1. (251 aa)    
Predicted Functional Partners:
Cpap_0047
PFAM: Type II secretion system F domain; KEGG: cce:Ccel_2412 type II secretion system protein.
  
  
 0.866
Cpap_2936
KEGG: cce:Ccel_1955 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.822
Cpap_0045
KEGG: cce:Ccel_2414 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
  
 0.809
Cpap_0388
KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1.
  
 
 0.774
Cpap_0151
KEGG: cce:Ccel_2777 hypothetical protein.
  
 0.725
Cpap_1609
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.725
Cpap_0049
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.704
Cpap_0149
PFAM: peptidase A24A prepilin type IV; KEGG: cce:Ccel_2779 peptidase A24A prepilin type IV.
   
  
 0.704
Cpap_2815
KEGG: aoe:Clos_0056 AraC family transcriptional regulator; PFAM: glycoside hydrolase family 39; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
  
 0.696
Cpap_3981
KEGG: tmt:Tmath_1866 S23 ribosomal protein.
  
  
 0.685
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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