STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3534PFAM: S-layer domain-containing protein; KEGG: pjd:Pjdr2_1142 S-layer domain protein. (223 aa)    
Predicted Functional Partners:
Cpap_3533
PFAM: S-layer domain-containing protein; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1376 S-layer domain protein.
 
     0.793
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.758
Cpap_1137
KEGG: cce:Ccel_2334 copper amine oxidase domain protein; manually curated; PFAM: copper amine oxidase-like domain-containing protein.
  
     0.739
Cpap_4103
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_2334 copper amine oxidase domain protein.
  
     0.727
Cpap_0005
PFAM: copper amine oxidase-like domain-containing protein; KEGG: lsp:Bsph_3063 hypothetical protein.
  
     0.699
Cpap_0448
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_0075 anion ABC transporter, anion-binding protein.
  
     0.690
Cpap_4000
PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein.
  
     0.666
Cpap_1950
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0278 S-layer domain protein.
  
     0.657
Cpap_3540
PFAM: protein of unknown function DUF107; KEGG: cce:Ccel_1381 hypothetical protein.
  
     0.655
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
     0.651
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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