STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3540PFAM: protein of unknown function DUF107; KEGG: cce:Ccel_1381 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Cpap_3541
KEGG: cce:Ccel_1382 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
 
  
 0.988
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.832
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.736
Cpap_2110
KEGG: cce:Ccel_0029 hypothetical protein.
  
     0.667
Cpap_0303
KEGG: cce:Ccel_2991 hypothetical protein.
  
   
 0.659
Cpap_3534
PFAM: S-layer domain-containing protein; KEGG: pjd:Pjdr2_1142 S-layer domain protein.
  
     0.655
Cpap_2754
KEGG: cce:Ccel_2393 S-layer domain protein; PFAM: copper amine oxidase-like domain-containing protein; SMART: Parallel beta-helix repeat.
  
     0.636
Cpap_4246
PFAM: protein of unknown function DUF107; KEGG: cth:Cthe_0857 hypothetical protein.
  
  
 0.608
Cpap_2323
PFAM: UvrD/REP helicase; KEGG: cce:Ccel_3423 superfamily I DNA helicase.
  
    0.602
Cpap_2273
KEGG: pmo:Pmob_1518 hypothetical protein.
  
     0.601
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.