STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3578Phenylacetate--CoA ligase; KEGG: cce:Ccel_1392 coenzyme F390 synthetase; PFAM: AMP-dependent synthetase and ligase. (413 aa)    
Predicted Functional Partners:
Cpap_3205
PFAM: thioesterase superfamily protein; KEGG: cce:Ccel_1701 thioesterase superfamily protein.
 
 
 0.870
Cpap_1119
PFAM: Amidase; KEGG: cce:Ccel_2653 amidase.
    
  0.742
Cpap_1654
PFAM: amino acid-binding ACT domain protein; KEGG: cce:Ccel_0670 amino acid-binding ACT domain protein.
 
   0.706
Cpap_3283
PFAM: acyl-CoA reductase; KEGG: cac:CA_C2287 acyl-CoA reductase LuxC.
  
 0.684
Cpap_3575
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.659
Cpap_2348
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cpe:CPE2531 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.636
Cpap_2505
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cce:Ccel_3198 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.636
Cpap_3576
PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1390 pyruvate ferredoxin/flavodoxin oxidoreductase.
 
    0.634
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
    
 0.614
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
       0.559
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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