STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3579KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein. (645 aa)    
Predicted Functional Partners:
Cpap_3581
PFAM: protein of unknown function DUF214; KEGG: ate:Athe_2296 protein of unknown function DUF214.
 
  
 0.951
Cpap_3580
KEGG: csc:Csac_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.900
Cpap_3582
PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
 
     0.870
Cpap_2357
Hypothetical protein; KEGG: cce:Ccel_3396 outer membrane protein-like protein.
  
 0.860
Cpap_2358
PFAM: outer membrane efflux protein; KEGG: cce:Ccel_3395 hypothetical protein.
  
 0.860
Cpap_1064
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
 
  
 0.831
Cpap_2012
KEGG: cce:Ccel_0343 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 0.797
Cpap_4179
TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; KEGG: cce:Ccel_2265 ABC-type bacteriocin transporter; SMART: AAA ATPase.
  
 0.797
Cpap_3422
KEGG: dhd:Dhaf_3722 ABC transporter related; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase.
  
 
 0.717
Cpap_1061
KEGG: cce:Ccel_0466 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.659
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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