STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3580KEGG: csc:Csac_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (225 aa)    
Predicted Functional Partners:
Cpap_3581
PFAM: protein of unknown function DUF214; KEGG: ate:Athe_2296 protein of unknown function DUF214.
 0.996
Cpap_1064
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
 0.983
Cpap_3579
KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
 
 0.900
Cpap_3582
PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
       0.696
Cpap_3710
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0856 protein of unknown function DUF214.
 
 0.603
Cpap_1882
KEGG: cce:Ccel_0227 hypothetical protein.
   
 
 0.582
Cpap_2767
Protein of unknown function DUF214; KEGG: sak:SAK_0172 permease, putative; manually curated; PFAM: protein of unknown function DUF214.
 
 0.577
Cpap_3921
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_1152 protein of unknown function DUF214.
  
  0.574
Cpap_1063
KEGG: cce:Ccel_0468 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
 
 
 0.570
Cpap_1143
Protein of unknown function DUF214; KEGG: ctc:CTC01418 putative permease; manually curated; PFAM: protein of unknown function DUF214.
  
  0.546
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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