STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3582PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein. (650 aa)    
Predicted Functional Partners:
Cpap_3579
KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
 
     0.870
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
  
    0.761
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
   
 0.760
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
   
 0.760
Cpap_2754
KEGG: cce:Ccel_2393 S-layer domain protein; PFAM: copper amine oxidase-like domain-containing protein; SMART: Parallel beta-helix repeat.
  
     0.758
Cpap_3533
PFAM: S-layer domain-containing protein; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1376 S-layer domain protein.
  
   
 0.755
Cpap_3581
PFAM: protein of unknown function DUF214; KEGG: ate:Athe_2296 protein of unknown function DUF214.
 
     0.751
Cpap_2121
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0039 S-layer domain protein.
  
     0.733
Cpap_1929
KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
   
 0.726
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
  
     0.717
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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