STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3583PFAM: Protein of unknown function DUF3243; KEGG: cce:Ccel_1393 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Cpap_3615
PFAM: major facilitator superfamily MFS_1; KEGG: cce:Ccel_1420 hypothetical protein.
  
     0.692
Cpap_1438
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_3477 small, acid-soluble spore protein.
  
    0.622
Cpap_3657
PFAM: tryptophan RNA-binding attenuator protein; KEGG: cce:Ccel_1460 transcription attenuation protein MtrB.
  
     0.579
Cpap_3584
PFAM: FMN-binding domain protein; KEGG: cce:Ccel_1394 FMN-binding domain protein.
       0.559
Cpap_3582
PFAM: S-layer domain-containing protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
 
     0.524
Cpap_2921
PFAM: GerA spore germination protein; KEGG: cce:Ccel_1971 GerA spore germination protein.
  
     0.496
Cpap_4018
PFAM: GerA spore germination protein; KEGG: cce:Ccel_1971 GerA spore germination protein.
  
     0.483
Cpap_0041
PFAM: GerA spore germination protein; KEGG: cce:Ccel_0521 GerA spore germination protein.
  
     0.473
Cpap_3202
KEGG: cce:Ccel_1704 dipicolinate synthase subunit B; TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein.
  
     0.467
Cpap_0819
KEGG: pjd:Pjdr2_3969 hypothetical protein.
  
     0.461
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.