STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3584PFAM: FMN-binding domain protein; KEGG: cce:Ccel_1394 FMN-binding domain protein. (186 aa)    
Predicted Functional Partners:
Cpap_1112
KEGG: mpd:MCP_2892 hypothetical protein.
  
     0.565
Cpap_3583
PFAM: Protein of unknown function DUF3243; KEGG: cce:Ccel_1393 hypothetical protein.
       0.559
Cpap_4010
PFAM: TniB family protein; KEGG: cth:Cthe_1115 Tn7-like transposition protein C.
  
     0.473
Cpap_4009
PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: cth:Cthe_1116 HMG-I and HMG-Y, DNA-binding.
  
     0.472
Cpap_1568
KEGG: cth:Cthe_1254 hypothetical protein.
  
     0.453
Cpap_4011
KEGG: cth:Cthe_1114 Tn7-like transposition protein D.
  
     0.447
Cpap_0966
KEGG: pop:POPTR_1071364 hypothetical protein.
  
    0.422
Cpap_2455
KEGG: cpy:Cphy_1217 hypothetical protein.
  
     0.415
Cpap_3585
KEGG: cce:Ccel_1395 hypothetical protein.
       0.401
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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