STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3607KEGG: cce:Ccel_1419 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; Helix-hairpin-helix DNA-binding class 1. (350 aa)    
Predicted Functional Partners:
Cpap_3022
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
 0.924
Cpap_4121
Diguanylate cyclase; SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: cce:Ccel_2318 diguanylate cyclase; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region.
 
 0.816
Cpap_0728
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
 0.765
Cpap_2763
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0502 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
 0.759
Cpap_1607
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
   
 0.733
Cpap_1735
KEGG: cbe:Cbei_2933 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
  
  
 0.719
Cpap_2669
KEGG: cce:Ccel_2569 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
    
  0.679
Cpap_2609
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_2505 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region.
 
0.515
Cpap_3478
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 methionine synthase (B12-dependent).
     
 0.496
Cpap_0798
TIGRFAM: glutamine synthetase, type I; KEGG: dhd:Dhaf_0994 glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
 
  
  0.454
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.