STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3680PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cce:Ccel_1486 penicillin-binding protein transpeptidase. (551 aa)    
Predicted Functional Partners:
Cpap_1069
PFAM: cell cycle protein; KEGG: cce:Ccel_0474 rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.915
Cpap_1077
KEGG: cce:Ccel_0482 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
 
 0.893
Cpap_2661
TIGRFAM: penicillin-binding protein 2; KEGG: cce:Ccel_2560 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
  
0.881
Cpap_0655
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
 
 
 0.855
Cpap_0117
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
 
 0.842
Cpap_0330
PFAM: cell cycle protein; KEGG: cce:Ccel_2934 cell cycle protein; Belongs to the SEDS family.
 
 
 0.816
Cpap_2663
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.814
Cpap_1073
KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
  
0.788
Cpap_0736
PFAM: cell cycle protein; KEGG: cce:Ccel_2477 cell cycle protein; Belongs to the SEDS family.
 
 0.775
Cpap_1072
KEGG: cce:Ccel_0477 cell division protein FtsL.
 
 
 0.718
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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