STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3723PFAM: Ubiquitin related modifier 1 family protein; KEGG: ttr:Tter_1313 UBA/ThiF-type NAD/FAD binding protein. (88 aa)    
Predicted Functional Partners:
Cpap_3722
Hypothetical protein; KEGG: mif:Metin_0789 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.773
Cpap_3724
KEGG: mba:Mbar_A0490 hypothetical protein.
       0.773
Cpap_3721
PFAM: Polyprenyl synthetase; KEGG: ton:TON_0137 bifunctional short-chain isoprenyl diphosphate synthase.
       0.732
Cpap_3725
PFAM: Methyltransferase type 11; KEGG: tsi:TSIB_0930 putative methyltransferase.
       0.705
Cpap_3720
PFAM: small multidrug resistance protein; KEGG: dsa:Desal_0931 small multidrug resistance protein.
       0.582
Cpap_3726
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sti:Sthe_0801 UBA/ThiF-type NAD/FAD binding protein.
       0.564
Cpap_3727
KEGG: aoe:Clos_2866 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
       0.553
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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