STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3729Two component transcriptional regulator, LytTR family; Manually curated; PFAM: LytTr DNA-binding region; response regulator receiver; KEGG: cce:Ccel_2646 two component transcriptional regulator, LytTR family; SMART: response regulator receiver. (261 aa)    
Predicted Functional Partners:
Cpap_3728
SMART: ATP-binding region ATPase domain protein; KEGG: cce:Ccel_2647 signal transduction histidine kinase regulating citrate/malate metabolism.
 
 
 0.927
Cpap_1145
KEGG: dhd:Dhaf_0494 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 0.925
Cpap_3300
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1227 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
 
 0.857
Cpap_3551
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_0994 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
  
 
 0.766
Cpap_1215
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ate:Athe_2372 histidine kinase internal region.
  
 
 0.754
Cpap_1709
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1646 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
  
 
 0.753
Cpap_3508
KEGG: tmt:Tmath_0509 multi-sensor signal transduction histidine kinase; PFAM: histidine kinase internal region; Cache domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
  
 
 0.752
Cpap_0484
Integral membrane sensor signal transduction histidine kinase; KEGG: cpr:CPR_0538 sensor histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
  
 
 0.736
Cpap_0770
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_2453 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
  
 
 0.735
Cpap_2227
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_0148 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein.
  
 
 0.734
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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