STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3733PFAM: regulatory protein TetR; KEGG: bha:BH0987 TetR/AcrR family transcriptional regulator. (199 aa)    
Predicted Functional Partners:
Cpap_3458
PFAM: regulatory protein TetR; KEGG: cac:CA_C3687 AcrR family transcriptional regulator.
  
     0.699
Cpap_3734
PFAM: Alcohol acetyltransferase; KEGG: gym:GYMC10_3761 alcohol acetyltransferase.
       0.675
Cpap_3735
KEGG: gym:GYMC10_3760 hypothetical protein.
       0.675
Cpap_2306
PFAM: regulatory protein TetR; KEGG: bcl:ABC0256 TetR family transcriptional regulator.
  
     0.552
Cpap_1615
PFAM: regulatory protein TetR; KEGG: spv:SPH_1289 transcriptional regulator, TetR family protein.
  
     0.534
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
    
 0.448
Cpap_3736
TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; protein of unknown function DUF901; elongation factor G domain IV; elongation factor G domain-containing protein; KEGG: cce:Ccel_1053 small GTP-binding protein; SMART: elongation factor G domain IV; elongation factor G domain-containing protein.
     
 0.431
Cpap_3732
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain-containing protein; KEGG: cce:Ccel_2643 peptidase S8/S53 subtilisin kexin sedolisin.
       0.425
Cpap_3737
Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.424
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.407
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.