STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3756KEGG: cce:Ccel_1065 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR. (98 aa)    
Predicted Functional Partners:
Cpap_3759
KEGG: cce:Ccel_1068 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
 
  
 0.945
Cpap_3758
TIGRFAM: redox-active disulfide protein 2; KEGG: cce:Ccel_1067 redox-active disulfide protein 2.
 
   
 0.828
Cpap_3757
PFAM: permease; KEGG: cce:Ccel_1066 permease.
 
  
 0.818
Cpap_1719
KEGG: cce:Ccel_2741 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
 
  
 0.732
Cpap_3755
KEGG: cce:Ccel_1064 hypothetical protein.
       0.553
Cpap_3912
KEGG: cce:Ccel_1144 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; DsrE family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.496
Cpap_3754
KEGG: cce:Ccel_1061 hypothetical protein.
       0.448
Cpap_3760
Transcriptional regulator, AraC family; KEGG: ctc:CTC00639 transcriptional regulatory protein; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: transcription activator effector binding; Helix-turn-helix, AraC domain.
  
    0.405
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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