STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3761PFAM: cytochrome b5; KEGG: cce:Ccel_1069 cytochrome b5. (149 aa)    
Predicted Functional Partners:
Cpap_3763
PFAM: nickel-dependent hydrogenase large subunit; KEGG: cce:Ccel_1071 nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.903
Cpap_3762
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: cce:Ccel_1070 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
     0.897
Cpap_3764
KEGG: cce:Ccel_1072 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
 
   
 0.895
Cpap_3760
Transcriptional regulator, AraC family; KEGG: ctc:CTC00639 transcriptional regulatory protein; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: transcription activator effector binding; Helix-turn-helix, AraC domain.
       0.460
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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