STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3797KEGG: gme:Gmet_1693 radical SAM family protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB. (423 aa)    
Predicted Functional Partners:
Cpap_2592
KEGG: dsy:DSY4423 hypothetical protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.767
Cpap_2591
KEGG: dsy:DSY4423 hypothetical protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.765
Cpap_0573
Manually curated; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_0831 radical SAM family protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.748
Cpap_3795
PFAM: protein of unknown function DUF43; KEGG: cce:Ccel_1087 protein of unknown function DUF43.
       0.701
Cpap_3796
PFAM: GCN5-related N-acetyltransferase; KEGG: cce:Ccel_1088 GCN5-related N-acetyltransferase.
       0.701
Cpap_3798
TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: cce:Ccel_1089 FkbH like protein.
 
     0.699
Cpap_3799
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_1090 hypothetical protein.
       0.658
Cpap_3805
KEGG: rpb:RPB_2074 radical SAM binding protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    
0.504
Cpap_1947
Manually curated; PFAM: AMP-dependent synthetase and ligase; cobalamin B12-binding domain protein; KEGG: cce:Ccel_2386 amino acid adenylation domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.413
Cpap_3807
KEGG: ate:Athe_0912 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.410
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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