STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3798TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: cce:Ccel_1089 FkbH like protein. (344 aa)    
Predicted Functional Partners:
Cpap_3799
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_1090 hypothetical protein.
       0.773
Cpap_1805
PFAM: phosphopantetheine-binding; KEGG: bpu:BPUM_0634 hypothetical protein.
 
     0.772
Cpap_3797
KEGG: gme:Gmet_1693 radical SAM family protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.699
Cpap_3795
PFAM: protein of unknown function DUF43; KEGG: cce:Ccel_1087 protein of unknown function DUF43.
       0.612
Cpap_3796
PFAM: GCN5-related N-acetyltransferase; KEGG: cce:Ccel_1088 GCN5-related N-acetyltransferase.
       0.608
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 
     0.498
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 0.496
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 0.480
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
   
 0.476
Cpap_3800
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; KEGG: cce:Ccel_1628 3-oxoacyl-(acyl-carrier-protein)-like protein.
       0.476
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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