STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3802PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_0985 phosphopantetheine-binding. (80 aa)    
Predicted Functional Partners:
Cpap_3801
PFAM: glycosyl transferase group 1; KEGG: dtu:Dtur_1622 glycosyl transferase group 1.
       0.737
Cpap_3803
PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2787 radical SAM domain-containing protein.
       0.668
Cpap_3800
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; KEGG: cce:Ccel_1628 3-oxoacyl-(acyl-carrier-protein)-like protein.
       0.654
Cpap_3804
PFAM: phosphopantetheine-binding; KEGG: bcg:BCG9842_B3396 hypothetical protein.
       0.604
Cpap_3805
KEGG: rpb:RPB_2074 radical SAM binding protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.604
Cpap_3806
KEGG: smm:Smp_163590 Ubiquitin-protein ligase BRE1.
       0.560
Cpap_3807
KEGG: ate:Athe_0912 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.533
Cpap_3808
KEGG: sli:Slin_6578 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.467
Cpap_3809
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: gym:GYMC10_4659 xylose isomerase domain protein TIM barrel.
       0.456
Cpap_3810
PFAM: LmbE family protein; KEGG: mma:MM_2100 hypothetical protein.
       0.456
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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