STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3812PFAM: glycosyl transferase family 2; KEGG: bmq:BMQ_pBM60061 glycosyl transferase, group 2 family protein. (297 aa)    
Predicted Functional Partners:
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
    
   0.865
Cpap_3810
PFAM: LmbE family protein; KEGG: mma:MM_2100 hypothetical protein.
       0.781
Cpap_3811
KEGG: rpb:RPB_2071 radical SAM family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.775
Cpap_3809
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: gym:GYMC10_4659 xylose isomerase domain protein TIM barrel.
       0.773
Cpap_3083
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_1811 glycosyl transferase family 2.
 
 
 0.764
Cpap_3808
KEGG: sli:Slin_6578 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.763
Cpap_3813
PFAM: AMP-dependent synthetase and ligase; KEGG: hau:Haur_3958 AMP-dependent synthetase and ligase.
       0.705
Cpap_3817
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cce:Ccel_1091 NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.659
Cpap_3818
PFAM: NAD-dependent epimerase/dehydratase; KEGG: tnp:Tnap_0421 NAD-dependent epimerase/dehydratase.
 
 
 0.655
Cpap_3807
KEGG: ate:Athe_0912 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.652
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.