STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3824KEGG: cce:Ccel_1093 Zn-dependent hydrolase of the beta-lactamase fold protein. (211 aa)    
Predicted Functional Partners:
Cpap_3827
PFAM: sodium/hydrogen exchanger; KEGG: npu:Npun_R6387 sodium/hydrogen exchanger.
    
 0.778
Cpap_0261
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0740 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
    0.752
Cpap_1170
Transcriptional antiterminator, BglG; KEGG: cbi:CLJ_B2357 putative PRD domain protein/PTS system, L-ascorbate family, IIA component; PFAM: PRD domain protein; M trans-acting positive regulator.
    
  0.678
Cpap_3825
KEGG: cce:Ccel_1094 methyladenine glycosylase; PFAM: methyladenine glycosylase.
       0.658
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.646
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
  
  
 0.596
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
  
  
 0.596
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
  
  
 0.596
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
  
  
 0.575
Cpap_1764
PFAM: Methyltransferase type 12; oxidoreductase domain protein; KEGG: slg:SLGD_01928 polyketide synthase.
  
  
 0.492
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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