STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3832KEGG: cce:Ccel_2387 cobalamin B12-binding domain protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (543 aa)    
Predicted Functional Partners:
Cpap_3831
PFAM: phosphopantetheine-binding; KEGG: sat:SYN_01151 acyl carrier protein.
 
     0.794
Cpap_1202
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.774
Cpap_3830
PFAM: alpha/beta hydrolase fold; KEGG: pmo:Pmob_0502 alpha/beta hydrolase fold.
 
     0.760
Cpap_0573
Manually curated; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_0831 radical SAM family protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.747
Cpap_3829
Radical SAM domain protein; KEGG: mxa:MXAN_4597 putative methyltransferase; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    
0.723
Cpap_3833
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: npu:Npun_R1784 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.718
Cpap_3834
PFAM: aminotransferase class I and II; KEGG: bbe:BBR47_31990 putative aspartate aminotransferase.
 
     0.631
Cpap_3828
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mar:MAE_60030 McnA protein; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.603
Cpap_1151
PFAM: protein of unknown function DUF181; KEGG: cbl:CLK_3700 streptolysin associated protein SagD.
  
     0.583
Cpap_3839
KEGG: mfe:Mefer_0758 protein of unknown function DUF362.
 
     0.558
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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