STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3836KEGG: bcg:BCG9842_B3389 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Cpap_3834
PFAM: aminotransferase class I and II; KEGG: bbe:BBR47_31990 putative aspartate aminotransferase.
       0.773
Cpap_3835
Amino acid adenylation domain protein; KEGG: bbe:BBR47_31980 putative non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.773
Cpap_3837
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2375 hypothetical protein.
       0.723
Cpap_3838
KEGG: bbe:BBR47_51240 hypothetical protein.
       0.707
Cpap_3839
KEGG: mfe:Mefer_0758 protein of unknown function DUF362.
       0.674
Cpap_3840
KEGG: cce:Ccel_2517 hypothetical protein.
       0.656
Cpap_3833
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: npu:Npun_R1784 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.592
Cpap_3841
KEGG: cce:Ccel_2381 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.587
Cpap_3832
KEGG: cce:Ccel_2387 cobalamin B12-binding domain protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.552
Cpap_3842
PFAM: asparagine synthase; KEGG: cce:Ccel_0984 hypothetical protein.
       0.542
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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