STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3847KEGG: csc:Csac_0204 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10. (417 aa)    
Predicted Functional Partners:
Cpap_3333
Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_1259 glycoside hydrolase family 39; PFAM: glycoside hydrolase family 39.
  
  
 0.833
Cpap_4119
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; S-layer domain-containing protein; Carbohydrate-binding CenC domain protein; KEGG: cce:Ccel_2320 glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
  
     0.747
Cpap_3846
KEGG: isc:IscW_ISCW016710 3-dehydroquinate synthase, putative; PFAM: 3-dehydroquinate synthase.
       0.741
Cpap_4120
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; S-layer domain-containing protein; KEGG: cce:Ccel_2319 glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
  
     0.734
Cpap_3845
KEGG: cce:Ccel_2391 hypothetical protein.
       0.711
Cpap_0251
PFAM: glycoside hydrolase family 48; Dockerin type 1; KEGG: cce:Ccel_0729 glycoside hydrolase family 48.
  
  
 0.650
Cpap_3311
KEGG: cce:Ccel_1240 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; protein of unknown function DUF303 acetylesterase; SMART: cellulose binding type IV.
  
 
   0.649
Cpap_3306
KEGG: cce:Ccel_1234 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
  
 
   0.646
Cpap_4043
PFAM: Dockerin type 1; KEGG: cce:Ccel_1207 cellulosome protein dockerin type I.
  
     0.617
Cpap_2220
Alpha-glucuronidase; KEGG: cce:Ccel_0141 glycosyl hydrolase 67 middle domain protein; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.604
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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