STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3857PFAM: transcriptional regulator PadR family protein; KEGG: cce:Ccel_1103 transcriptional regulator, PadR-like family. (118 aa)    
Predicted Functional Partners:
Cpap_3858
KEGG: cce:Ccel_1104 hypothetical protein.
 
     0.961
Cpap_1084
PFAM: transcriptional regulator PadR family protein; KEGG: ere:EUBREC_1374 hypothetical protein.
  
     0.772
Cpap_3855
KEGG: gtn:GTNG_0300 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.479
Cpap_3856
PFAM: protein of unknown function DUF214; KEGG: eel:EUBELI_20665 hypothetical protein.
       0.479
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.