STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3903PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_1136 extracellular solute-binding protein family 1. (432 aa)    
Predicted Functional Partners:
Cpap_3901
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_1134 binding-protein-dependent transport systems inner membrane component.
 
  0.852
Cpap_3902
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_1135 binding-protein-dependent transport systems inner membrane component.
 
 0.850
Cpap_3904
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1137 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
 
     0.804
Cpap_3905
KEGG: cce:Ccel_1138 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.
 
  
  0.770
Cpap_0354
KEGG: cce:Ccel_2909 ABC transporter related; PFAM: ABC transporter related; TOBE domain-containing protein; SMART: AAA ATPase.
  
 0.748
Cpap_2295
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0201 binding-protein-dependent transport systems inner membrane component.
 
  0.708
Cpap_0482
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1793 L-arabinose transport system (permease).
  
  0.704
Cpap_2296
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0202 binding-protein-dependent transport systems inner membrane component.
  
 0.679
Cpap_1208
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2375 binding-protein-dependent transport systems inner membrane component.
 
  0.666
Cpap_1209
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0621 binding-protein-dependent transport systems inner membrane component.
  
 0.664
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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