STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3920KEGG: cce:Ccel_1151 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (228 aa)    
Predicted Functional Partners:
Cpap_3921
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_1152 protein of unknown function DUF214.
 
  0.967
Cpap_3581
PFAM: protein of unknown function DUF214; KEGG: ate:Athe_2296 protein of unknown function DUF214.
  0.935
Cpap_1064
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
  0.882
Cpap_1143
Protein of unknown function DUF214; KEGG: ctc:CTC01418 putative permease; manually curated; PFAM: protein of unknown function DUF214.
 
  0.858
Cpap_3711
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0857 protein of unknown function DUF214.
  
  0.818
Cpap_0990
KEGG: smb:smi_1718 ABC transporter ABC nucleotide-binding domain; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 
0.748
Cpap_0499
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0558 protein of unknown function DUF214.
 
  0.741
Cpap_3947
KEGG: cce:Ccel_1177 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.692
Cpap_3923
Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1154 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
     0.690
Cpap_3471
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: amt:Amet_2038 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.674
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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