STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3923Integral membrane sensor signal transduction histidine kinase; KEGG: cce:Ccel_1154 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (414 aa)    
Predicted Functional Partners:
Cpap_3922
KEGG: cce:Ccel_1153 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
  0.959
Cpap_3926
KEGG: cce:Ccel_1157 two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
  0.894
Cpap_1140
Two component transcriptional regulator, winged helix family; KEGG: ctc:CTC01421 transcriptional regulatory component of sensory transduction system; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
  0.877
Cpap_3921
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_1152 protein of unknown function DUF214.
 
 
  0.868
Cpap_4115
KEGG: cce:Ccel_2324 two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
  
  0.861
Cpap_0500
KEGG: cce:Ccel_0559 two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
  
  0.848
Cpap_0579
Two component transcriptional regulator, winged helix family; KEGG: cbi:CLJ_B0951 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
  
  0.827
Cpap_2765
KEGG: ant:Arnit_2038 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
  
  0.827
Cpap_0696
KEGG: cce:Ccel_2106 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
  0.822
Cpap_3252
Two component transcriptional regulator, winged helix family; KEGG: bpu:BPUM_2916 response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
  0.820
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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