STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3945PFAM: transcriptional regulator PadR family protein; KEGG: cce:Ccel_1175 transcriptional regulator, PadR-like family. (113 aa)    
Predicted Functional Partners:
Cpap_3946
PFAM: Protein of unknown function DUF2812; KEGG: cce:Ccel_1176 hypothetical protein.
 
     0.921
Cpap_3948
KEGG: cce:Ccel_1178 ABC-type Na+ efflux pump permease component-like protein.
 
     0.744
Cpap_3947
KEGG: cce:Ccel_1177 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.709
Cpap_0372
PFAM: Protein of unknown function DUF2812; KEGG: mla:Mlab_0296 hypothetical protein.
 
     0.704
Cpap_3950
KEGG: cce:Ccel_1180 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.502
Cpap_3949
TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: cce:Ccel_1179 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I.
       0.466
Cpap_3951
KEGG: cce:Ccel_1181 hypothetical protein.
       0.432
Cpap_1407
Pyruvate dehydrogenase (acetyl-transferring); KEGG: cce:Ccel_3450 dehydrogenase E1 component; PFAM: dehydrogenase E1 component.
   
    0.429
Cpap_3944
PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; KEGG: cce:Ccel_1174 metallophosphoesterase; Belongs to the 5'-nucleotidase family.
       0.403
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.