STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3947KEGG: cce:Ccel_1177 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (298 aa)    
Predicted Functional Partners:
Cpap_3948
KEGG: cce:Ccel_1178 ABC-type Na+ efflux pump permease component-like protein.
 
  
 0.982
Cpap_3945
PFAM: transcriptional regulator PadR family protein; KEGG: cce:Ccel_1175 transcriptional regulator, PadR-like family.
       0.709
Cpap_3920
KEGG: cce:Ccel_1151 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.692
Cpap_3946
PFAM: Protein of unknown function DUF2812; KEGG: cce:Ccel_1176 hypothetical protein.
       0.689
Cpap_3950
KEGG: cce:Ccel_1180 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.536
Cpap_3949
TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: cce:Ccel_1179 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I.
       0.516
Cpap_3951
KEGG: cce:Ccel_1181 hypothetical protein.
       0.461
ecfA-2
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.453
ecfA
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.406
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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