STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3953PFAM: RNA-binding protein, predicted; KEGG: cce:Ccel_1186 hypothetical protein. (64 aa)    
Predicted Functional Partners:
Cpap_3952
KEGG: cce:Ccel_1185 hypothetical protein.
 
     0.964
Cpap_3954
KEGG: cce:Ccel_1187 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein.
       0.550
Cpap_1779
KEGG: ddf:DEFDS_1701 hypothetical protein.
  
     0.495
Cpap_0285
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dat:HRM2_43030 HgdA.
  
     0.473
Cpap_1857
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
    0.459
Cpap_3881
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
    0.459
Cpap_2606
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cbh:CLC_1584 putative 2-hydroxyglutaryl-CoA dehydratase subunit.
  
     0.458
Cpap_3950
KEGG: cce:Ccel_1180 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
    
  0.440
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
    
 0.439
Cpap_3474
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: ckr:CKR_2210 cobalt transport protein CbiM.
    
 0.439
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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