STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3969PFAM: YbbR family protein; KEGG: cce:Ccel_1202 YbbR family protein. (412 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.981
Cpap_3970
PFAM: FAD dependent oxidoreductase; KEGG: cce:Ccel_1203 FAD dependent oxidoreductase.
       0.797
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.762
Cpap_3645
KEGG: cce:Ccel_1448 tetratricopeptide TPR_2.
  
     0.706
Cpap_2124
KEGG: cce:Ccel_0042 primosome, DnaD subunit.
 
     0.625
Cpap_0023
KEGG: cce:Ccel_0508 hypothetical protein.
  
     0.624
Cpap_0026
KEGG: cce:Ccel_0511 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
 
     0.560
Cpap_0038
PFAM: 3D domain-containing protein; KEGG: cce:Ccel_0518 3D domain protein.
  
     0.535
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
  
     0.527
Cpap_0634
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2046 hypothetical protein.
  
     0.525
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.