STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3983KEGG: cbb:CLD_3319 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Cpap_3982
TIGRFAM: type I restriction-modification system, M subunit; KEGG: cpf:CPF_2599 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
       0.773
Cpap_3984
PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity subunit.
       0.773
Cpap_3985
KEGG: ptm:GSPATT00020985001 hypothetical protein.
       0.682
Cpap_3986
VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
       0.551
Cpap_3987
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.484
Cpap_3981
KEGG: tmt:Tmath_1866 S23 ribosomal protein.
       0.480
Cpap_3988
PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_2595 hypothetical protein.
       0.478
Cpap_3989
KEGG: nca:Noca_4764 hypothetical protein.
       0.444
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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